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Although the java, io, javanet, and javarmi* packages provide very convenient programming abstractions and work very well in the domain for which they were designed, they incur high parallel overheads and are considered to be inadequate for high performance computing High performance computers typically use homogeneous networks of computers, so the general purpose distributed computing approaches supported by Java's TCP/IP support result in data conversions and checks that are not usually needed in high performance computing Another source of parallel overhead is the emphasis in Java on portability This led to lowest common denominator facilities in the design of Java's networking support A major problem is blocking I/O This means, for example, that a read operation on a socket will block until data is available Stalling the application is usually avoided in practice by creating a new thread to perform the read Because a read operation can be applied to only one socket at a time, this leads to a cumbersome and nonscalable programming style with separate threads for each communication partner To remedy some of these deficiencies, (which were also affecting high performance enterprise servers) new I/O facilities in the javanio packages were introduced in Java 2 14 Because the Java specification has now been split into three separate versions (enterprise, core, and mobile), the core Java and enterprise Java APIs are no longer restricted to supporting only features that can be supported on the least capable devices Results reported by Pugh and Sacco [PS04] indicate that the new facilities promise to provide sufficient performance to make Java a reasonable choice for high performance computing in clusters The javanio packages provide nonblocking I/O and selectors so that one thread can monitor several socket connections The mechanism for this is a new abstraction, called a channel, that serves as an open connection to sockets, files, hardware devices, etc A SocketChannel is used for communication over TCP or UDP connections A program may read or write to or from a SocketChannel into a Byte Buffer using nonblocking operations Buffers are another new abstraction introduced in Java 2 14 They are containers for linear, finite sequences of primitive types They maintain a state containing a current position (along with some other information) and are accessed with "put" and "get" operations that put or get an element in the slot indicated by the current position Buffers may be allocated as direct or indirect The space for a direct buffer is allocated.

4222 Using a Low-Level Output Stream Each output stream operates differently; for specific details, the Java API documentation should be consulted for the relevant class The simple example given below is sufficient to show how output streams are used It concerns an application that copies a file by reading the contents of the file and writing it, one byte at a time, to a new file Code for FileOutputStreamDemo

Notably, the bulk deletion capabilities of the SQL DELETE statement are absent Data can be stored or retrieved in batches, but items must be deleted one at a timeAWS has a good record for responding to customer feedback, so if this becomes a highly requested feature, it could be the target of a future enhancement

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import javaio*; // 4, Listing 2 public class FileOutputStreamDemo { public static void main(String args[]) { // Two parameters are required, the source and destination if (argslength != 2) { Systemerrprintln ("Syntax - FileOutputStreamDemo src dest"); return; } String source = args[0]; String destination = args[1]; try { // Open source file for input InputStream input = new FileInputStream( source ); Systemoutprintln ("Opened " + source + " for reading"); // Output file for output OutputStream output = new FileOutputStream ( destination ); Systemoutprintln ("Opened " + destination + " for writing"); int data = inputread();

outside of the usual memory space managed by the JVM and subject to garbage collection As a result, direct buffers are not moved by the garbage collector, and references to them can be passed to the system level network software, eliminating a copying step by the JVM Unfortunately, this comes at the price of more complicated programming, because put and get operations are not especially convenient to use Typically, however, one would not use a Buffer for the main computation in the program, but would use a more convenient data structure such as an array that would be bulk copied to or from the Buffer[6] Many parallel programmers desire higher level, or at least more familiar, communication abstractions than those supported by the standard packages in Java Several groups have implemented MPI like bindings for Java using various approaches One approach uses the JNI (Java Native Interface) to bind to existing MPI libraries JavaMPI [Min97] and mpiJava [BCKL98] are examples Other approaches use new communication systems written in Java These are not widely used and are in various states of availability Some [JCS98] attempt to provide an MPI like experience for the programmer following proposed standards described in [BC00], while others experiment with alternative models [Man] An overview is given in [AJMJS02] These systems typically use the old javaio because the javanio package has only recently become available An exception is the work reported by Pugh and Sacco [PS04] Although they have not, at this writing, provided downloadable software, they describe a package providing a subset of MPI with performance measurements that suggests an optimistic outlook for the potential of Java with javanio for high performance computing in clusters One can expect that in the near future more packages built on javanio that simplify parallel programming will become available 642 Collective Communication When multiple (more than two) UEs participate in a single communication event, the event is called a collective communication operation MPI, as a message passing library, includes most of the major collective communication operations.

The minimal Select statement consists of two required clauses an output selection clause followed by a domain clause:

while ( data != -1) { // Write byte of data to our file outputwrite (data); // Read next byte data=inputread(); } // Close both streams inputclose(); outputclose(); Systemoutprintln ("I/O streams closed"); } catch (IOException ioe) { Systemerrprintln ("I/O error - " + ioe); } } }

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